PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00034274001
Common NameGSBRNA2T00034274001, LOC106453234
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 375aa    MW: 40887.8 Da    PI: 8.9178
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00034274001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.57.2e-3977138263
               zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                          ++++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+sss
  GSBRNA2T00034274001  77 PQEKINCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSSS 138
                          6899******************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-2676126IPR003851Zinc finger, Dof-type
PfamPF027019.0E-3379135IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.74281135IPR003851Zinc finger, Dof-type
PROSITE patternPS01361083119IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDATKWTQGF QEMMNVKPME QIMIPNNNTH QSNTTSSARP NTVLTSSGGV SAAGAIVSTG  60
VSNSNNTSVV VERKSRPQEK INCPRCNSTN TKFCYYNNYS LTQPRYFCKG CRRYWTEGGS  120
LRNVPVGGSS RKNKRSSSSN ILQTTPSSLG LTTTLPDLNP PIIFSNQIPN KSKGASQDLN  180
MLSFPVMQDQ HVHMSKFLQM HKMEGNGNMT HQQPSSSSSL YGSSSSPVSA LELLRTGVNV  240
SSRSGINSFM PSGPMMDSSN NVMYTSSGFP TMVDYKTSNL SFSTDHQGLE HNNNNNNNNN  300
NNSSGDAHSD HHQGRVLFPF GDQMKELSSS ITQEVDHDDN QQQKSHGNNN NNNSSPNNGY  360
WSGMFSTTGG GSSW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.144940.0seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00034274001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3528590.0AK352859.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-17-N20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013750952.10.0PREDICTED: dof zinc finger protein DOF2.5-like
SwissprotQ9ZPY00.0DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBLA0A078JC120.0A0A078JC12_BRANA; BnaA04g27160D protein
STRINGBra039272.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25282673
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46590.21e-147Dof family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]